Polycystic ovary syndrome (PCOs) is a common endocrine disorder in the reproductive age. It involves hyperandrogenism, ovulatory disturbances, infertility, obesity, hyperinsulinemia, insulin resistance and cardiovascular diseases (CVD). Metformin is one of the most common prescribed oral drugs for patients with PCOs that sensitize body to insulin. Moreover, Metformin induces increase in homocysteine (Hcy) levels, as an independent risk factor for CVD, by reducing of the plasma vitamin B12 or folate levels. This study is designed to examine the effects of metformin therapy and the folic acid and vitamin B12 supplements on the serum Hcy levels and other cardiovascular factors such as lipid profile and insulin resistance, in patients with PCOs. A total of 150 PCOs patients are selected by using Rotterdam criteria for PCOs (2003) and inclusion and exclusion criteria. Subjects are randomly divided to three groups. The first group receives metformin; the second group receives metformin with vitamin B12 supplement; the third group receives metformin with folic acid supplement, each for 6 months. Process including: Collection of the blood samples (12 h fasting state), measurement of the serum Hcy levels, vitamin B12 and folic acid levels, before and after treatment. Measurement of lipid profile [total cholesterol, HDL-C, LDL-C and triglyceride (TG)], Hormonal parameters [FSH, LH, total testosterone, free testosterone, dehydroepiandrosterone sulphate (DHEAS), 17-OH-progesterone and prolactin], fasting plasma insulin levels, fasting plasma glucose levels and insulin resistance (according to QUICKI and HOMA).